Valid Input — def.valid.input • eddy4R.york

Checks input file for several key requirements

Number of rows !=0
Are required variables present? Skips the file if critcal vals are missing otherwise flags the optional variables that are missing
Are these columns the correct class
Are any of the stanard deviations of variables 0? Skip/flag as above
Check against the missing data threshold set in para
If there is no H20 data, set it to 1e-12.

Usage

def.valid.input(
  eddy.data,
  varsRequired,
  varsCritical,
  species,
  speciesRatioName,
  aggregationDuration,
  periodStartDate,
  periodEndDate,
  missingThreshold,
  freq,
  logger
)

Arguments

eddy.data: input data
varsRequired: character vector of columns that must be nominally present to pass def.valid.input()
varsCritical: these must have greater than the missingThreshold to pass def.valid.input()
species: vector of species names. Match with IntlNatu naming
speciesRatioName: created automatically from species. name of gas species following the rtioMoleDry format
aggregationDuration: flux aggregation period (s)
periodStartDate: periodStartDate
periodEndDate: periodEndDate
missingThreshold: decimal percentage of missing data threshold per file
freq: data aquisition frequency of input data
logger: logger object